PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78504.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 201aa    MW: 23042.2 Da    PI: 8.2183
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78504.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.2e-15271548
                     -HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqkyl 48
                     +++E+ l++++++++G++                           +W++Iar+++ gRt++++k++w++++
     MLOC_78504.2  2 SPQEEHLIIELHARWGNRfgpkedltkaaffhlkqvkhtnilsmyRWSRIARRLP-GRTDNEIKNYWRTHM 71
                     89*****************************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.17E-7171No hitNo description
SMARTSM007174.7E-7173IPR001005SANT/Myb domain
PROSITE profilePS5129413.66175IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-18272IPR009057Homeodomain-like
PfamPF002493.0E-12270IPR001005SANT/Myb domain
SuperFamilySSF466894.68E-84476IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSPQEEHLII ELHARWGNRF GPKEDLTKAA FFHLKQVKHT NILSMYRWSR IARRLPGRTD  60
NEIKNYWRTH MRKKAQERKT DMSPSSSSSS FTYQSCLLET APIIRMDESS THNGTTCFSS  120
VLKSNQSVMD GYSMDQIWKE IEAPAMLPID DTSCSNLPSP LLPFTIGDHY CPPGVIWKMD  180
NGDLKMLAPQ FGYGNGERSC Y
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78504.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672180.0AK367218.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2053B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156608.11e-107myb-related protein MYBAS1-like
SwissprotQ53NK61e-71MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A446R0B71e-129A0A446R0B7_TRITD; Uncharacterized protein
STRINGMLOC_78504.21e-152(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.11e-26myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]