PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78504.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 133aa    MW: 15265.2 Da    PI: 7.5079
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78504.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-17243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
     MLOC_78504.5  2 SPQEEHLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                     89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.521147IPR017930Myb domain
CDDcd001671.67E-11143No hitNo description
SMARTSM007172.9E-10145IPR001005SANT/Myb domain
PfamPF002491.6E-15242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20244IPR009057Homeodomain-like
SuperFamilySSF466895.85E-13248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSPQEEHLII ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KTDMSPSSSS  60
SSFTYQSCLL ETAPIIRMDE SSTHNGTTCF SSVLKSNQSV MDGYSMDQIW KEIEAPAMLP  120
IDDTSCSNLP SPL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78504.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672180.0AK367218.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2053B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156608.12e-84myb-related protein MYBAS1-like
SwissprotQ53NK68e-67MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLF2DTK02e-92F2DTK0_HORVV; Predicted protein (Fragment)
STRINGMLOC_78504.23e-88(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.14e-33myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]