PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79001.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 124aa    MW: 13878.2 Da    PI: 4.3676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79001.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.17e-161411255
           AP2 12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +g+W+AeIrdp+    r  r++lg+f+tae+Aa+a+++a+ +++g
  MLOC_79001.1  1 WGKWAAEIRDPR----RaVRVWLGTFDTAEDAARAYDRAAVEFRG 41
                  9*********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-18150IPR016177DNA-binding domain
PROSITE profilePS5103220.837149IPR001471AP2/ERF domain
SMARTSM003807.0E-27155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-26149IPR001471AP2/ERF domain
CDDcd000181.15E-14149No hitNo description
PfamPF008476.9E-9141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
WGKWAAEIRD PRRAVRVWLG TFDTAEDAAR AYDRAAVEFR GPRAKLNFPF PEQQQQLGDG  60
NAAAAKSDTC SPSPRSADAE VRVPQSWQQN GGQEAGDQLW DGLQDLMKLD ESELWFPPSS  120
NSWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-171501464ATERF1
3gcc_A2e-171501464ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3613460.0AK361346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1138G03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149086.15e-72ethylene-responsive transcription factor ERF109-like
TrEMBLF2DBT22e-83F2DBT2_HORVV; Predicted protein
STRINGMLOC_79001.12e-84(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-17redox responsive transcription factor 1