PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79171.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 140aa    MW: 15122.7 Da    PI: 4.9865
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79171.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY568.1e-181501258
                  EE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY 12 qKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                  qK++ g+++pr+Y+rCt++   gC+++k+v+r++ dp ++e+ Y+geH++
  MLOC_79171.1  1 QKDILGATYPRAYFRCTHRhtqGCQATKQVQRTHADPLLFEVAYHGEHTC 50
                  9*****************98999*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.147148IPR003657WRKY domain
SMARTSM007742.6E-21152IPR003657WRKY domain
PfamPF031067.5E-17150IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-16151IPR003657WRKY domain
SuperFamilySSF1182904.32E-15150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
QKDILGATYP RAYFRCTHRH TQGCQATKQV QRTHADPLLF EVAYHGEHTC VQAAVQQQPP  60
ACFGQGQQSP PAVAPEGIQW PVTPPSFPST QDDHVGDCYP SVCQLDGGYG YGAGGGLGAD  120
MGVGSQLDDW FLYLSEVQNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8631116e-55DQ863111.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 27 (WRKY27) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196716.18e-56probable WRKY transcription factor 53
TrEMBLA0A287GNQ71e-100A0A287GNQ7_HORVV; Uncharacterized protein
STRINGMLOC_79171.15e-99(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-20WRKY family protein