PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7925.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WOX
Protein Properties Length: 170aa    MW: 19109.5 Da    PI: 11.6651
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7925.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.53.5e-1668128257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++R+++ +eq+++Le+lF++   +p+++e+ ++ ++l     + +++V++WFqNr+ + k+
  MLOC_7925.1  68 KPRWNPRPEQIRVLETLFNSgLINPTRDEIPRIRMRLqeygPVGDSNVFYWFQNRKSRSKN 128
                  89*****************99****************99999****************995 PP
2Wus_type_Homeobox105.53.3e-3467129264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi++Le+l++sGl +P+++ei ri+++L+eyG ++d NVfyWFQNrk+R+++k
        MLOC_7925.1  67 TKPRWNPRPEQIRVLETLFNSGLINPTRDEIPRIRMRLQEYGPVGDSNVFYWFQNRKSRSKNK 129
                        689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-755128IPR009057Homeodomain-like
SuperFamilySSF466893.34E-1164132IPR009057Homeodomain-like
PROSITE profilePS5007110.49564129IPR001356Homeobox domain
SMARTSM003891.4E-566133IPR001356Homeobox domain
CDDcd000861.76E-468129No hitNo description
PfamPF000461.1E-1368127IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MASPNSRQQQ QHWPSMFRSK HGSQVWQSQP DMTGSPPSLV SGSAAAAGHS FKSPFSSGPD  60
QERNTDTKPR WNPRPEQIRV LETLFNSGLI NPTRDEIPRI RMRLQEYGPV GDSNVFYWFQ  120
NRKSRSKNKL RNAAARAAPV RACAPARQHA AAPYTPPPKQ FHPPKPPLFS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7925.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-153HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159266.11e-98WUSCHEL-related homeobox 7-like
SwissprotQ0JKK65e-48WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A287L9L21e-120A0A287L9L2_HORVV; Uncharacterized protein
TrEMBLA0A287L9L41e-121A0A287L9L4_HORVV; Uncharacterized protein
TrEMBLA0A287L9N81e-121A0A287L9N8_HORVV; Uncharacterized protein
STRINGMLOC_7925.11e-122(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-41homeobox-3