PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79329.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 149aa    MW: 16965.4 Da    PI: 12.095
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79329.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-1479123347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
     MLOC_79329.2  79 PWTEDEHRLFLLGLKKYGKGDWRNISRNFVRTRTPTQVASHAQKY 123
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.502.6E-4125No hitNo description
PROSITE profilePS5129416.96371128IPR017930Myb domain
SuperFamilySSF466895.87E-1774127IPR009057Homeodomain-like
SMARTSM007175.9E-1276126IPR001005SANT/Myb domain
CDDcd001675.29E-1179124No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1179122IPR009057Homeodomain-like
PfamPF002493.8E-1279123IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.9E-1679126IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
VSRGWRVLAQ DERLWEAACV REWAGLGFSE HLLRAVVLLL GGFRRAHAVS INARRRFGGD  60
CGNWHGVRAP GQGRRRPAPW TEDEHRLFLL GLKKYGKGDW RNISRNFVRT RTPTQVASHA  120
QKYFIRLSLG ARRPSIHDIT AVHPPSPSQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79329.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU8570361e-145KU857036.1 Triticum aestivum GID2 protein isoform 1 (gid2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200806.13e-82F-box protein GID2-like
SwissprotQ8S9H75e-31DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A287K3181e-104A0A287K318_HORVV; Uncharacterized protein
STRINGMLOC_79329.21e-104(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1245133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-22MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]