PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79342.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 241aa    MW: 25423.1 Da    PI: 9.6417
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79342.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.81.4e-24170233164
                   XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                   e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv eL+a N +L++el++lk+ +++++ e++
  MLOC_79342.3 170 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKEDCKTMEVENK 233
                   89*********************************************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-17162229No hitNo description
PfamPF001705.4E-22170232IPR004827Basic-leucine zipper domain
SMARTSM003381.1E-21170234IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.863172235IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-11173228No hitNo description
CDDcd147028.30E-18175225No hitNo description
PROSITE patternPS000360177192IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MYHHPAAAYY AHAHASMAAG VPYMAGESAS AAGKRVGKTR RVPSGEINSS SGSGDAGSQG  60
SSEKGDAGAN QKGSSSSAKR RKSGATNTEG EPSQAATVQN AVTESPVEVK DRCASKLLVL  120
APGRAALTTP APNLNSGIDP LSASPSSLGQ GEVNAAASSQ SNASLSQMDE RELKRERRKQ  180
SNRESARRSR LRKQQECEEL AQKVSELTAA NGTLRSELDQ LKEDCKTMEV ENKQLMCRVK  240
Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192RRSRLRK
2186193RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79342.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3598350.0AK359835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1104F02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175793.11e-103DNA-binding protein EMBP-1
SwissprotP250321e-112EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLM0Z9121e-168M0Z912_HORVV; Uncharacterized protein
STRINGMLOC_79342.21e-169(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.17e-22basic region/leucine zipper transcription factor 16