PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7939.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 400aa    MW: 41993.8 Da    PI: 7.0773
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7939.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.4e-29240299159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+H h+
  MLOC_7939.1 240 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSILITTYEGTHSHP 299
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-31225301IPR003657WRKY domain
SuperFamilySSF1182904.71E-27233301IPR003657WRKY domain
PROSITE profilePS5081127.772235301IPR003657WRKY domain
SMARTSM007743.0E-35240300IPR003657WRKY domain
PfamPF031062.9E-26241299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDVGVERPPP VKEENKPDTM QIGSALPMVL ESFPSTQRNS IATSKDDKLE ATKAEMGEVR  60
EENERLKTLL SHIVRDYQSL QTHFHDAVKV KQQAPAADKL PAASTPAPTA DDLVSLSLGS  120
GGYSRPKGAH QRSLSSSSSG TETDPDDQLS LGLSSRRSTD GDDRQAARPS ATPLMNLSSD  180
SSADDTAAPG HDLPAAACPT ATKARKSPGA GGDGADDEVL QQQAKKARVS VRVKCDTPTM  240
NDGCQWRKYG QKISKGNPCP RAYYRCTVAP SCPVRKQVQR CADDMSILIT TYEGTHSHPL  300
PPAAAAMAST TSAAASMLLA GSSSSSSHGH HLPFASAGLL GPTTISTIAS CPTVTLDLTA  360
PHSLMQQQYQ SPYAAAMAAG YESKALPAAW SSGYLAPYGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20227303176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224233KKARVSVRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3680420.0AK368042.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2066P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189817.10.0probable WRKY transcription factor 72
TrEMBLA0A287KCW40.0A0A287KCW4_HORVV; Uncharacterized protein
STRINGMLOC_7939.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-48WRKY DNA-binding protein 72