PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79666.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 163aa    MW: 17845.4 Da    PI: 6.3545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79666.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06113133323
                   ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                   C  Cgk Fs++ +L  H+r+H
  MLOC_79666.1 113 CRECGKLFSSWRSLFGHMRSH 133
                   ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-62548IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-42649IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0622648IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5332653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429111134IPR007087Zinc finger, C2H2
SMARTSM003550.013111133IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.38E-5112134No hitNo description
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
PfamPF139121.0E-5113133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-5113133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDAVGVGELA AAGMHHHHHH HHHHHHRCKV CGKGFSCGRS LGGHMRSHIS LGEALPEADD  60
DLIRRSSANG GRTTANGAVG YGLRENPKKT RRLSDFADEE EDQGGDAGDQ RACRECGKLF  120
SSWRSLFGHM RSHAPGAARD HDEYDDDVDL LGEEEYSFAA EAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79666.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182857.12e-77zinc finger protein ZAT9-like
TrEMBLA0A3B6C3878e-83A0A3B6C387_WHEAT; Uncharacterized protein
TrEMBLA0A446M3288e-83A0A446M328_TRITD; Uncharacterized protein
STRINGMLOC_79666.11e-114(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-19C2H2-like zinc finger protein