PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79758.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 251aa    MW: 27338.1 Da    PI: 7.2955
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79758.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.14.8e-811244120374
          GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrll 214
                   +qGlQWp L++ LasRp+gpp++R+Tg+g+    s e+le+tg+rL++fA++lg+pfef + va +  +l++e+L v++  +Ea+aV++ +  h+l+
  MLOC_79758.1   1 MQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFAHTLGLPFEFYP-VAGKAGNLDPEKLGVDTrrREAVAVHWLH--HSLY 90 
                   69****************************....***************************.799**********999888*********9..9999 PP

          GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                   d +++ ++    +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s+er++vE++ll+rei+nv+a  g +r+ + + 
  MLOC_79758.1  91 DVTGNDSN----TLNLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYGEDSSERHVVEQQLLAREIRNVLAVGGPARTGDIK- 181
                   88888888....**********************.899****************************************************999987. PP

          GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +++Wre+l ++GF++++l  +aa+qa+lll +++sdgy++ ee+g+l lgWkd  L+++SaWr
  MLOC_79758.1 182 FGNWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLLEENGTLKLGWKDLCLLTASAWR 244
                   **************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.4871224IPR005202Transcription factor GRAS
PfamPF035141.7E-781244IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MQGLQWPGLF HILASRPGGP PRVRLTGLGA SMEALEATGK RLSDFAHTLG LPFEFYPVAG  60
KAGNLDPEKL GVDTRRREAV AVHWLHHSLY DVTGNDSNTL NLIQRLAPKV VTMVEQDLSH  120
SGSFLARFVE AIHYYSALFD SLDASYGEDS SERHVVEQQL LAREIRNVLA VGGPARTGDI  180
KFGNWREKLA QSGFRAASLA GSAAAQASLL LGMFPSDGYT LLEENGTLKL GWKDLCLLTA  240
SAWRPIQALG R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1431245138380Protein SCARECROW
5b3h_A1e-1431245137379Protein SCARECROW
5b3h_D1e-1431245137379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650590.0AK365059.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2030J22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178107.11e-180protein SCARECROW 2-like
SwissprotQ2RB591e-162SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A453HQA80.0A0A453HQA8_AEGTS; Uncharacterized protein
TrEMBLF2DME10.0F2DME1_HORVV; Predicted protein (Fragment)
TrEMBLF2DR281e-180F2DR28_HORVV; Predicted protein
STRINGMLOC_79758.10.0(Hordeum vulgare)
STRINGTraes_4BS_A05D3DC53.11e-179(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-130GRAS family protein