PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_80060.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRF
Protein Properties Length: 218aa    MW: 23006.1 Da    PI: 9.8372
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_80060.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.5e-25133176144
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                   ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e
  MLOC_80060.1 133 EPEPGRCRRTDGKKWRCSRDVVQGHKYCERHVHRGRGRSRKPVE 176
                   69***************************************998 PP
2QLQ51.82.4e-1867103137
           QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                   s +T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  MLOC_80060.1  67 SVLTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 103
                   5689********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-567103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.61968103IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.0E-1169102IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.31133177IPR014977WRC domain
PfamPF088797.8E-21134176IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006995Biological Processcellular response to nitrogen starvation
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009624Biological Processresponse to nematode
GO:0009631Biological Processcold acclimation
GO:0016036Biological Processcellular response to phosphate starvation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0050826Biological Processresponse to freezing
GO:0051365Biological Processcellular response to potassium ion starvation
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005524Molecular FunctionATP binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MADEKEGDSL QPPSKLPRLS SADENAGAVT MAVSSPLGLG LGLGLGGDSR GEQHALEARA  60
VAAAAKSVLT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVAASSF GPHRFPSLIG  120
LGSMCFDYRS SMEPEPGRCR RTDGKKWRCS RDVVQGHKYC ERHVHRGRGR SRKPVEGAPA  180
APAHNGSSTA ATAAPSRGIG FSPAGILHAT HSAAAHAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_80060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0997371e-170FP099737.1 Phyllostachys edulis cDNA clone: bphyst023e19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180427.11e-124growth-regulating factor 10-like
SwissprotQ6EPP99e-94GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A1D6DHE11e-125A0A1D6DHE1_WHEAT; Growth regulating factor 7-A1
STRINGMLOC_80060.11e-158(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.11e-38growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]