PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_80064.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 199aa    MW: 21387.8 Da    PI: 5.1001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_80064.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-182474156
           AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                  + y+GVr++   g+Wv+eIr+       + +r++lg++ t+e+Aa+a++aa+++l+g+
  MLOC_80064.1 24 PVYRGVRFR--AGKWVSEIRElR-----KhTRIWLGTYPTPEMAAAAYDAAALALRGA 74
                  68*****96..5*********55.....35*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-132473IPR001471AP2/ERF domain
SMARTSM003801.4E-242587IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-182582IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-252582IPR001471AP2/ERF domain
PROSITE profilePS5103218.9272581IPR001471AP2/ERF domain
CDDcd000184.60E-132683No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEQGREGLMG SMCGRRPRAE TRHPVYRGVR FRAGKWVSEI RELRKHTRIW LGTYPTPEMA  60
AAAYDAAALA LRGAGTALNF PDAARSRPAP ASMSADDVRA AAAAAAAAAM GSTWTSHRGD  120
QCYDDQPRGG ESHRRELDDT VGVVDEDDVF EMPRLMVSMA EGLMINPPVL GTAAADGCSA  180
ASYYAEAEDE GAVSLWDHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1323811272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_80064.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158202.11e-107ethylene-responsive transcription factor ERF026-like
SwissprotQ9SJR04e-36ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLM0ZA361e-141M0ZA36_HORVV; Uncharacterized protein
STRINGMLOC_80064.11e-142(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-15ERF family protein