PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_80107.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 615aa    MW: 68857.6 Da    PI: 5.3917
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_80107.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-082548327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +++C +f++ G C  Gd+C+F+Hgp
  MLOC_80107.2 25 MVPCYYFQK-GNCIKGDKCPFSHGP 48
                  789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-62248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4742249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-62347IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-62448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-42648IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MFGAPTPGIP ALSSHYAAYN SGKQMVPCYY FQKGNCIKGD KCPFSHGPQT AGNNPPEQVA  60
KVSSFPLEQP QTQKNEFLGV KEFAQTNHLV QQGGPIIDDR SKMSVNRAAA NFARTAAAAM  120
PAELASSAVK SLPKSGRVQN SMPAANKSVG TSSGEDHREC YQNNLPVETD PMQDWNQPYQ  180
TPPQDDLPED SRDADDLLGE SSPGFDVLVA NDTDAGAYLH DADDFGRDIY PVEDYEYAPA  240
DFEIQPHHER ELFNGMGEQG PIVQMYDGYD RKRRRTSSER NLDRPSYSER RSRQRETGPV  300
EIDGSDLRHR LRRRKINGSP GISPERIGES RRRDDRHRER AYDGHRTHRE RHQGPRGSTL  360
SSRLQGRIKL PGRSPDRVDA RSERERDRRQ LRDRLSPVMH MDIQGGRHRE AGHHQERVRQ  420
RSSERASSAR MADGKHSRRN VTDSLNFAGR KDFGPESRKA NGSVQSEASL DFEGPTPLSV  480
ILQRKRQAAS GNGNGSSAQS VKEDNSAAVS HRQAESPVEA EKQGYDNTVS SEEYKSRSGD  540
EEYKEEGLVP ASSSHGDKAE AEDMIEVENQ EADNYEQRQG ESEYEGTEDE NAYQDDEEEF  600
EDDDDFARKV GVVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270274RKRRR
2270275RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_80107.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757340.0AK375734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3102P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191143.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLM0ZA670.0M0ZA67_HORVV; Uncharacterized protein
STRINGMLOC_80107.10.0(Hordeum vulgare)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]