PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_8033.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 229aa    MW: 25412.5 Da    PI: 6.5732
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_8033.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-1962115356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++++eq + Le  F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k
  MLOC_8033.1  62 KKRRLSDEQAKFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 115
                  45689************************************************9 PP
2HD-ZIP_I/II1123.8e-3662153293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrls+eq+k+LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e  +L+e+l+e
  MLOC_8033.1  62 KKRRLSDEQAKFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFNKLRAAHDAVVVRNCHLEAELLRLKERLAE 153
                  9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.63357117IPR001356Homeobox domain
SMARTSM003896.6E-1660121IPR001356Homeobox domain
SuperFamilySSF466899.61E-1761125IPR009057Homeodomain-like
PfamPF000461.4E-1662115IPR001356Homeobox domain
CDDcd000861.07E-1462117No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1662115IPR009057Homeodomain-like
PRINTSPR000315.0E-68897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000315.0E-697113IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSPEEGERLL FPSFVFPDSF PADDAAPVVS GEEQKKAGRQ RRRRRARQAA AGGEGGGDDA  60
AKKRRLSDEQ AKFLEMSFRK ERKLETPRKV QLAAELGLDT KQVAVWFQNR RARYKSKLIE  120
EEFNKLRAAH DAVVVRNCHL EAELLRLKER LAETEEEKNK AMAAVATAGG SSPSSSSFST  180
VTAMVGGQQF GMEEAEADFT YMSEYAYTNY MMDLAAAGGY LGGAYDQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14264RRRARQAAAGGEGGGDDAAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_8033.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652950.0AK365295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033D08.
GenBankAK3702530.0AK370253.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107J20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157992.11e-106homeobox-leucine zipper protein HOX12-like
SwissprotA2XDK51e-83HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
SwissprotQ10QF21e-83HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLF2DN271e-165F2DN27_HORVV; Predicted protein
STRINGMLOC_8033.11e-166(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-28homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]