PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_80844.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25352.8 Da    PI: 8.939
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_80844.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1977131256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  MLOC_80844.1  77 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTK 131
                   788899***********************************************98 PP
2HD-ZIP_I/II126.21.5e-4077166191
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  MLOC_80844.1  77 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 166
                   69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-1950134IPR009057Homeodomain-like
SuperFamilySSF466899.84E-1964134IPR009057Homeodomain-like
PROSITE profilePS5007117.36273133IPR001356Homeobox domain
SMARTSM003891.7E-1675137IPR001356Homeobox domain
PfamPF000467.9E-1777131IPR001356Homeobox domain
CDDcd000862.91E-1477134No hitNo description
PRINTSPR000314.0E-6104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000314.0E-6113129IPR000047Helix-turn-helix motif
PfamPF021832.0E-11133167IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24133176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MMERADDLGL SLSLSSPLAP RTHHVAMLLH APERRFLEMP LLPAKRVSAV SADEERSGQR  60
GGGSDDEDGG CGMDGSRKKL RLSKDQSAVL EDSFREHPTL NPRQKAALAQ QLGLRSRQVE  120
VWFQNRRART KLKQTEVDCE FLKRCCETLT EENRRLQKEV QELRALKLVS PHQYMHMSPP  180
TTLTMCPSCE RVSNNNNNNN NFTGDRRNVV DGAICHRPIA VRPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17581SRKKLRL
2125133RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_80844.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220060.0AK122006.1 Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164579.11e-119homeobox-leucine zipper protein HOX17-like
SwissprotQ01I231e-108HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLA0A287J3811e-162A0A287J381_HORVV; Uncharacterized protein
STRINGMLOC_80844.11e-165(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-67homeobox protein 2