PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_80902.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MIKC_MADS
Protein Properties Length: 152aa    MW: 17587.2 Da    PI: 8.6594
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_80902.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.6e-22957149
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  kri+n ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y
  MLOC_80902.1  9 KRIDNPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYQY 57
                  79*********************************************99 PP
2K-box28.85e-1172150179
         K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                   y++++++++++   ++ + el+k+ k  + L++e+R +  +d e+ ++  L  Le++Le ++ k+Rs K++ +  ++ +
  MLOC_80902.1  72 YEAATHTKVWSDIRQERRAELEKVAKMCDLLEKELRFMTVDDGEQYTVPSLAALEHNLEAAMHKVRSEKDRKIGGEMTY 150
                   56677888*************************************************************9988777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.146161IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-27294IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-233859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-1184151IPR002487Transcription factor, K-box
PROSITE profilePS512979.07485152IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRGRSEIKR IDNPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYQYLAP  60
TAPSVKEFVE RYEAATHTKV WSDIRQERRA ELEKVAKMCD LLEKELRFMT VDDGEQYTVP  120
SLAALEHNLE AAMHKVRSEK DRKIGGEMTY LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-16190195MEF2 CHIMERA
6byy_B7e-16190195MEF2 CHIMERA
6byy_C7e-16190195MEF2 CHIMERA
6byy_D7e-16190195MEF2 CHIMERA
6bz1_A9e-16190195MEF2 CHIMERA
6bz1_B9e-16190195MEF2 CHIMERA
6bz1_C9e-16190195MEF2 CHIMERA
6bz1_D9e-16190195MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_80902.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5570510.0EU557051.1 Hordeum vulgare MIKC-type MADS-box transcription factor WM16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182424.11e-107MADS-box transcription factor 32
SwissprotQ8S1511e-94MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLB2CZ841e-108B2CZ84_HORVU; MIKC-type MADS-box transcription factor WM16
STRINGMLOC_80902.11e-109(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-24MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]