PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_81131.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 218aa    MW: 22935.4 Da    PI: 7.3758
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_81131.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-31130188159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp +v++tYeg+H h 
  MLOC_81131.1 130 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCSVKKRVERDRDDPAYVVTTYEGTHSHA 188
                   59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-33116190IPR003657WRKY domain
SuperFamilySSF1182905.36E-28122190IPR003657WRKY domain
PROSITE profilePS5081131.158125190IPR003657WRKY domain
SMARTSM007749.2E-35130189IPR003657WRKY domain
PfamPF031061.5E-24131187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAAVGAAPVL YQQQAQAVGD ACFFSSMSSY FSNEAISSSC SSPASSFSAA LGATPPAAPA  60
ISPDPASQFD ISEYLYGDGP LAAPLAPVGA AVASSATAVP ARSAAESAAA VERPRTERIA  120
FRTRTEIEIL DDGYKWRKYG KKSVKNSPNP RNYYRCSTEG CSVKKRVERD RDDPAYVVTT  180
YEGTHSHASP STVYYASQDA ASGRFFVAGT HPPPGSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-25118190274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_81131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3637830.0AK363783.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2018N15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192531.11e-118probable WRKY transcription factor 51
TrEMBLM0ZBS01e-155M0ZBS0_HORVV; Uncharacterized protein
STRINGMLOC_81131.11e-156(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-41WRKY DNA-binding protein 51