PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_81739.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 184aa    MW: 21004.6 Da    PI: 8.6288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_81739.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.64.4e-18211466128
           NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
                   +F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++   ++ + yfF+ r++ +    r++     g W ++g++++  s ++  v 
  MLOC_81739.1  21 EFDPTEDELVLHFLRPQLRGFPPRVAGAVVEADPCASPPWELLERHGLlRRGHGYFFAARRRGKV---RRTPEGGGGAWMHSGNKEDRRSVTELGVV 114
                   6************************999**************754444244477****9988653...344456799*******9988887777777 PP

           NAM 102 lkktLvfy.....kgrapkgektdWvmheyrl 128
                    + t++ y     +g     ++t Wvm ey++
  MLOC_81739.1 115 ARWTMTRYcfyarDGAGAGRRSTGWVMSEYEI 146
                   7777765544465455555569********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.26816172IPR003441NAC domain
SuperFamilySSF1019411.96E-2821171IPR003441NAC domain
PfamPF023651.6E-1321146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDLGDAGGVV VKEEAGVEAE EFDPTEDELV LHFLRPQLRG FPPRVAGAVV EADPCASPPW  60
ELLERHGLLR RGHGYFFAAR RRGKVRRTPE GGGGAWMHSG NKEDRRSVTE LGVVARWTMT  120
RYCFYARDGA GAGRRSTGWV MSEYEITDPR CYRRADDGEE DQYWVLCHVR RSIRENVKPR  180
SRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_81739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770680.0AK377068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201278.11e-110NAC domain-containing protein 48-like
TrEMBLM0ZCR71e-130M0ZCR7_HORVV; Uncharacterized protein
STRINGMLOC_81739.11e-131(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-10NAC domain containing protein 41