PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_82002.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 525aa    MW: 57904.2 Da    PI: 6.4182
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_82002.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like734.3e-2347100155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kpr+ Wt+eLH++F+ea++q+ G e+A P +ilelm+v+ Lt+++++SHLQk+R+
  MLOC_82002.1  47 KPRVAWTTELHNKFLEAINQI-GLEEASPNKILELMNVDYLTRNNIASHLQKHRS 100
                   79*******************.9*******************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.49244103IPR017930Myb domain
SuperFamilySSF466893.4E-1744103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-2544104IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2147100IPR006447Myb domain, plants
PfamPF002495.7E-84999IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSRDNAEDQR VHPGNLGSCK DSKNKRNDEY YSNKDKEGTH SSTTQKKPRV AWTTELHNKF  60
LEAINQIGLE EASPNKILEL MNVDYLTRNN IASHLQKHRS YLNTVNPNSP GDASERQNSS  120
INKQRNFMHE HDHERWNVSS GGNPYWNPNY FGATSQLGQL TNKQSNLCMG SLIDGGRMSR  180
YFLPHTPDSR RFADSDDPPI SLDNGIPDGI MLDEFSSYNS GTSYLDSMCG KLMKTSKGES  240
PSNLRSYFTN TSSGGGMSTL ANEYQVEPLK SINKYHINMN EPSTHVVHTV GRPSKFPGFA  300
GTYNNPRWSS MTAIHHRSGT SHVPPRVNIP RINQLTSYKT SSSKMLLQNK MQPFIGNTTS  360
MAGLTEQIVP FNIPTNSSYV GMLNGQNSAP MEPSQMVNGG SITTLPIILN DQISPFNIAN  420
NTSLVGTMLN DNSALGTGRP SMTDINTVNC GRTISTHSNL QTAGFSELTQ MLDDGDADGI  480
LPVQESMVNQ QDHNDILKGI SAFLSDDIVN LLDDDFIGEH GVIDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-2243106164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_82002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287XU930.0A0A287XU93_HORVV; Uncharacterized protein
STRINGMLOC_82002.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15285415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-22response regulator 10