PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_8220.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 181aa    MW: 19500.9 Da    PI: 6.1227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_8220.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-202271255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  MLOC_8220.1 22 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 71
                 59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.40E-322179No hitNo description
SuperFamilySSF541715.04E-232279IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-332280IPR001471AP2/ERF domain
PROSITE profilePS5103223.0772279IPR001471AP2/ERF domain
SMARTSM003809.6E-382285IPR001471AP2/ERF domain
PfamPF008476.6E-142371IPR001471AP2/ERF domain
PRINTSPR003672.2E-112334IPR001471AP2/ERF domain
PRINTSPR003672.2E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
PPPGASAAAL ALAGVAPAQS KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEDAAL  60
AYDKAAFRLR GDLARLNFPS LRRGGAHLAG PLHASVDAKL TAICQSLAAP SSKNSAEAEP  120
EPESPKCSAS TEGEDSVSAG SPPPVPEMEK LDFTEAPWDE SETFHLRKYP SVEIDWDSIL  180
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-231879163ATERF1
3gcc_A2e-231879163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_8220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3475030.0DQ347503.1 Triticum aestivum DRF-like transcription factor DRFL2a (DRFL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155853.11e-102ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E42e-64RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A287UPZ31e-127A0A287UPZ3_HORVV; Uncharacterized protein
STRINGMLOC_8220.11e-128(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-50related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]