PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_9448.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 80aa MW: 9202.76 Da PI: 10.1892

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_9448.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.4	1.1e-08	26	71	2	47
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 Y+ YA++ GF vr k s+ +ge +++ +vC + g + ++k + MLOC_9448.1 26 HYKMYARQKGFGVRYCFRKMSEASGELIRASLVCHRAGLKIKRKVD 71 7*************************************99998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-6	26	71	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MPEVMSTPQQ PTAMMRFDTL EDAEKHYKMY ARQKGFGVRY CFRKMSEASG ELIRASLVCH 60 RAGLKIKRKV DTQNPQPIAP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_9448.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239385.1	5e-17	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A287XRT3	2e-52	A0A287XRT3_HORVV; Uncharacterized protein
STRING	MLOC_9448.1	2e-54	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	5e-07	FAR1-related sequence 4