PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_9768.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 366aa    MW: 38819.2 Da    PI: 10.2248
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_9768.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44.2e-095299253
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                  ++ V+ ++ +g+ vA+Ir+p     +  +r +lg f taeeAa+a+ia + kl
  MLOC_9768.1 52 VFRRVSKKP-TGKCVARIRCP-----KvgARRYLGGFNTAEEAARAYIASAVKL 99
                 688899888.9*********9.....33499******************99887 PP
2AP228.15.2e-09203252155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GV++++ +g+++A+ r+         +  lg f tae+A +a++aa+ kl+g
  MLOC_9768.1 203 TKFRGVHRKP-SGKYAAQNRHaG-----GNSRCLGPFNTAEDAVRAYDAAAVKLHG 252
                  69*****888.7******55522.....355569********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-752112IPR001471AP2/ERF domain
PROSITE profilePS5103212.49752117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1152102IPR001471AP2/ERF domain
CDDcd000182.39E-1253102No hitNo description
SuperFamilySSF541712.09E-953102IPR016177DNA-binding domain
PROSITE profilePS510329.941115186IPR001471AP2/ERF domain
SMARTSM003802.0E-4139192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-9144186IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-6144186IPR016177DNA-binding domain
CDDcd000183.46E-15203262No hitNo description
SMARTSM003807.0E-17204266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-16204261IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-13204260IPR016177DNA-binding domain
PROSITE profilePS5103215.079204260IPR001471AP2/ERF domain
PRINTSPR003671.0E-6205216IPR001471AP2/ERF domain
PRINTSPR003671.0E-6242262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDAKADGDSV ALLRHVSCVG EDVGAVQSCR GRDAVESTKE RKAPLRPVAR TVFRRVSKKP  60
TGKCVARIRC PKVGARRYLG GFNTAEEAAR AYIASAVKLP GAVGLKKSRA AGEVSFKGQA  120
GGKAAAAAKS RSRASSMPAF HGVRIWDPAQ RAKLFLGAFD AAEEADGAFD AEAVKLRGAM  180
AKTNLKRQPT VRKKAATRTD AGTKFRGVHR KPSGKYAAQN RHAGGNSRCL GPFNTAEDAV  240
RAYDAAAVKL HGVKAITNFN NTPMAAAVDD GEESPMDLND VPEMRGVRAK TNLNKPPLVA  300
GSADDGEESR MDLAHSNFPE LPALGLFSGS ITADAQLDDM FADLPPLDLQ QVGELLKDMD  360
FANMMA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_9768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287TM580.0A0A287TM58_HORVV; Uncharacterized protein
STRINGMLOC_9768.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2916834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.27e-07cytokinin response factor 2