PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_9927.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 175aa    MW: 19107.4 Da    PI: 12.1687
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_9927.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll ++v+q G g+W+++a+  g++R++k+c++rw +yl
      MLOC_9927.1 17 KGPWTALEDRLLTEYVQQQGEGSWNSVAKLTGLRRSGKSCRLRWVNYL 64
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0271268IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-201367IPR009057Homeodomain-like
SMARTSM007171.8E-131666IPR001005SANT/Myb domain
PfamPF002491.6E-151764IPR001005SANT/Myb domain
SuperFamilySSF466892.91E-211891IPR009057Homeodomain-like
CDDcd001677.81E-101964No hitNo description
Gene3DG3DSA:1.10.10.606.1E-76891IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAMDAMSSAV LQGGWRKGPW TALEDRLLTE YVQQQGEGSW NSVAKLTGLR RSGKSCRLRW  60
VNYLRPDLKR GKITPDEESV ILHLHAMLGN RCGRRSRGAC RGGRTTRSRT TGGRTSRRRG  120
RPGGPGRSCC TSTSSSSSSS TASTSTPCTS SSSSSSRCRC RWNRRATTTS RSSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-14109120100MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_9927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9604501e-169EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182485.15e-60transcription factor WER-like
TrEMBLM0ZFM04e-62M0ZFM0_HORVV; Uncharacterized protein
STRINGMLOC_9927.26e-63(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-39myb domain protein 305