PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_9943.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 145aa    MW: 16283.2 Da    PI: 7.6208
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_9943.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-1496144348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      rW+  E+e l+d+v+q+G+g+Wk I ++      gRt+ ++k++w++ +
      MLOC_9943.3  96 RWSSVEEEALKDGVEQFGSGNWKDILSHNAdvfIGRTPVDLKDKWRNMM 144
                      9********************************9************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.90489145IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-1589145IPR009057Homeodomain-like
SuperFamilySSF466895.6E-1690144IPR009057Homeodomain-like
SMARTSM007173.0E-593145IPR001005SANT/Myb domain
CDDcd116601.82E-2095145No hitNo description
PfamPF002491.3E-1096143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDNAVNINAE VNNQAANCSI AGSSAVNDQG ETLRKGMPSS LMDWNPTAQS LLWEDSIDSD  60
GSRSQLHRPH LPSPRRIPVS PLQVAENKSM RRRARRWSSV EEEALKDGVE QFGSGNWKDI  120
LSHNADVFIG RTPVDLKDKW RNMMR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_9943.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755070.0AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185046.11e-77uncharacterized protein LOC109770747
TrEMBLF2EH801e-100F2EH80_HORVV; Predicted protein
STRINGMLOC_9943.11e-102(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-16TRF-like 5