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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_9945.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
C3H |
| Protein Properties |
Length: 392aa MW: 42931 Da PI: 8.564 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_9945.2 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 34.2 | 4.3e-11 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
elCr+++r G CkyG++C+F H
MLOC_9945.2 5 PELCRNYQR-GSCKYGEQCRFVH 26
69*******.************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 392 aa
Download sequence Send
to blast |
MNRRPELCRN YQRGSCKYGE QCRFVHANSN QHQQQQQAKP NPFGFGAGSR QQPQQSFGAQ 60
SQQFQQQQQK PNPFGFGVQG GAAQQRNESG PAKPFQNKWV RDPSAPQTKQ GEAQPAPQPA 120
HTSCTDPESC RQQISDDFKN EAPLWKLTCY AHLRSGPCDI TGDISYEELR AKAYEEGKQG 180
KPMQSIVEGE RNLQNAKLME FTNLLNKACS TPSFPTAGSF PEVKNNSTFG SSQTNGPPVF 240
SSFNQLGAAT NFGSGPRTAA PGVPTNTIFG QPTLTFGQST QSTFGRSTQS TPSFGAPTFG 300
STGMKFGVPD AFGSQTSKQS FGSYHNSSMS SNNNFPNSIS SSHHRDIDKQ SVELLNGMTP 360
RTSAMDQAPI EDSRNDKQDD SIWLKEKWEI GQ
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK365451 | 0.0 | AK365451.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034E14. |
