PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G006600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 259aa MW: 28617.5 Da PI: 9.2987

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G006600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00093	197	219	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++Fs+ L H + H Manes.01G006600.1.p 197 YECDVCSRRFSTGQALGGHKSYH 219 99**********99998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.1E-8	136	158	No hit	No description
SMART	SM00355	0.28	136	158	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.429	136	163	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.0E-5	136	158	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.1E-8	192	219	No hit	No description
Pfam	PF13912	1.7E-11	196	221	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.49	197	219	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.723	197	224	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	199	219	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDSLFAASWS TTGKRTFSFG CCSSSSCLNH VNQKILERIP TMILLKSMGF AEKNISDVLG 60 DMGNEKMKQN IEETMQHWCS TNNFDTISEE SAATPTDRRK KRCTDKGVLK EPMKKKKKMD 120 IKLKRLSELV YPKGSYVCKQ CNKVFDDFRA LGGHTAAHNR NKKAENAPSE ELGIRGGDLN 180 RGSSLAEPAV DNKGKRYECD VCSRRFSTGQ ALGGHKSYHR KTARGEVQEV SGEGTAPAKD 240 VDLKFDLNAP PNELVWGG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	117	KKRCTDKGVLKEPMKKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G006600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629644.1	0.0	zinc finger protein ZAT9-like
TrEMBL	A0A2C9WGL2	0.0	A0A2C9WGL2_MANES; Uncharacterized protein
STRING	cassava4.1_028217m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18825	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	5e-14	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Manes.01G006600.1.p