PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G006800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 288aa    MW: 32345.4 Da    PI: 8.2914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G006800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013180202123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+k+F +   L  H  +H
  Manes.01G006800.1.p 180 YVCKECNKVFDDFRALGGHTASH 202
                          9*********9988887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.658180207IPR007087Zinc finger, C2H2
PfamPF139121.6E-6180202IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-6180202No hitNo description
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-6236256No hitNo description
PfamPF139122.0E-4240258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDSSFSSVST QDYYDQDRHQ EQYHYQDDGD QEHPKETTHS EATVINLIDS LNAGSWSTTR  60
KRTFCFCDSS CLNHVNQKIL ERIPTMILLK SMGFAKKNIS DVLRDMGNEK MKQNIEETVQ  120
QWCSTNNSDT ISEESAATPT DRRKKRCTDM GVLKKSMKKK KKMDIKLKSL SELVDSKGSY  180
VCKECNKVFD DFRALGGHTA SHNRNKKAEN APSEELGTGG GDLDRGSSLA ELAVDNKGKR  240
YECGMCSRRF STGQALGGFQ QCKAECFLSL KLQAFMCGQR AIPSYAKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143161KKRCTDMGVLKKSMKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G006800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632174.10.0uncharacterized protein LOC110629491
TrEMBLA0A2C9WIX30.0A0A2C9WIX3_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_028217m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1882535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-12salt tolerance zinc finger