PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G008100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GRAS

Protein Properties

Length: 447aa MW: 49724.4 Da PI: 6.4712

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G008100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	411.9	5.7e-126	47	445	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaal..... 81 +++lL++cAe +s++d+++a++l++ ls +sp+gd+ +Rl++ f++AL+ rl+ + ++ al + +t+ + a Manes.01G008100.1.p 47 MRQLLITCAELISQSDFSAAHRLISVLSSGSSPYGDSRERLVHQFVKALSLRLNPHAAAISCALmNIGNTTLSVgaaG----GASsaatg 132 589**************************************************88888877734444443333331....22245678 PP GRAS 82 .....................klfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiT 145 +++++P+++fshltaNqaIlea+e g++++HiiDfdi++G+QWp+L+qaLa+R+ ++pp lRiT Manes.01G008100.1.p 133 danvgslisreyeeealqscyLSLNQITPFIRFSHLTANQAILEAIEvGQQAIHIIDFDIMHGVQWPPLMQALAERSsnnlSPPPVLRIT 222 89999999999999998875444*******************95569**********************888888*** PP GRAS 146 gvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234 g g+ + + l++tg+rL kfA++lg++f+f++l+++ + + ++++ + p+E+laVn+v+ lhrll+++ + +L+ +k l Manes.01G008100.1.p 223 GTGH----DLNILHRTGDRLFKFAQSLGLKFQFHPLLVSnNDPSSLPSAITLLPDEVLAVNCVHYLHRLLKNDSRD---LRIFLHRIKAL 305 ....9***********************6652444556999****************9544433...457**** PP GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 +Pkvv+++e+ea+hn++ F++rfleal++y+a+fdslea+lp++s+er vE+ ++grei+++va+eg++rrerhe++e+W+++l++ GF Manes.01G008100.1.p 306 NPKVVTIAEREANHNHPFFFQRFLEALDHYTAIFDSLEATLPPNSRERLAVEQIWFGREIMDIVAAEGEDRRERHERFESWEMMLRSTGF 395 ************************************************************************************** PP GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++vpls +a +qaklllr ++ s+gy+++ s+s++lgW++++L+svS+W Manes.01G008100.1.p 396 TNVPLSPFALSQAKLLLRLHYpSEGYHLQILSNSFFLGWQNHALFSVSSW 445 ************************************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.43	21	425	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-123	47	445	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MLGSLNSSSS HDQEEEEALD LHYQLNLIPQ PSPGGTTSGF TSSAIHMRQL LITCAELISQ 60 SDFSAAHRLI SVLSSGSSPY GDSRERLVHQ FVKALSLRLN PHAAAISCAL MNIGNTTLSV 120 GAAGGASSAA TGDANVGSLI SREYEEEALQ SCYLSLNQIT PFIRFSHLTA NQAILEAIEV 180 GQQAIHIIDF DIMHGVQWPP LMQALAERSS NNLSPPPVLR ITGTGHDLNI LHRTGDRLFK 240 FAQSLGLKFQ FHPLLVSNND PSSLPSAITL LPDEVLAVNC VHYLHRLLKN DSRDLRIFLH 300 RIKALNPKVV TIAEREANHN HPFFFQRFLE ALDHYTAIFD SLEATLPPNS RERLAVEQIW 360 FGREIMDIVA AEGEDRRERH ERFESWEMML RSTGFTNVPL SPFALSQAKL LLRLHYPSEG 420 YHLQILSNSF FLGWQNHALF SVSSWH*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MLGSLNSSSS HDQEEEEALD LHYQLNLIPQ PSPGGTTSGF TSSAIHMRQL LITCAELISQ  60
SDFSAAHRLI SVLSSGSSPY GDSRERLVHQ FVKALSLRLN PHAAAISCAL MNIGNTTLSV  120
GAAGGASSAA TGDANVGSLI SREYEEEALQ SCYLSLNQIT PFIRFSHLTA NQAILEAIEV  180
GQQAIHIIDF DIMHGVQWPP LMQALAERSS NNLSPPPVLR ITGTGHDLNI LHRTGDRLFK  240
FAQSLGLKFQ FHPLLVSNND PSSLPSAITL LPDEVLAVNC VHYLHRLLKN DSRDLRIFLH  300
RIKALNPKVV TIAEREANHN HPFFFQRFLE ALDHYTAIFD SLEATLPPNS RERLAVEQIW  360
FGREIMDIVA AEGEDRRERH ERFESWEMML RSTGFTNVPL SPFALSQAKL LLRLHYPSEG  420
YHLQILSNSF FLGWQNHALF SVSSWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-62	54	445	25	377	Protein SCARECROW
5b3h_D	6e-62	54	445	25	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G008100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021623926.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-142	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2C9WJ63	0.0	A0A2C9WJ63_MANES; Uncharacterized protein
STRING	cassava4.1_022846m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-142	GRAS family protein

Link Out ? help Back to Top
Phytozome	Manes.01G008100.1.p

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]