PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G024100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 370aa    MW: 42015.4 Da    PI: 4.8961
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G024100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.6e-0958104242
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          + ++C+ +e+ ++ + C+ ++  lC +C  e+H        H++vp+
  Manes.01G024100.1.p  58 RVWICTVCENAPAAFTCQADEANLCINCDNEIHLAnplarrHNRVPV 104
                          5689*****************************55577777999986 PP
2CCT65.51.5e-22305348144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++R++eKrk+RkFeKkirY++RKa+Ae+RpRvKGrFv+++
  Manes.01G024100.1.p 305 REARVQRFREKRKSRKFEKKIRYATRKANAENRPRVKGRFVRKK 348
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.1291461IPR000315B-box-type zinc finger
SMARTSM003363.4E-71461IPR000315B-box-type zinc finger
CDDcd000217.65E-61761No hitNo description
PROSITE profilePS5011910.4857104IPR000315B-box-type zinc finger
PfamPF006434.1E-758104IPR000315B-box-type zinc finger
CDDcd000218.46E-760104No hitNo description
SMARTSM003366.2E-962104IPR000315B-box-type zinc finger
PfamPF062035.1E-17305347IPR010402CCT domain
PROSITE profilePS5101716.599305347IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSKVCSDGDG YPSNWARKCD TCHAETCTLY CHTHSAYFCN SCDAYIHEAN PLASQHERVW  60
ICTVCENAPA AFTCQADEAN LCINCDNEIH LANPLARRHN RVPVLPISST VNTSSTTCKE  120
EFREPMLNST ENEVTANKFR EELLEEEETD SWLLLDLDDN DNLTNSGFTN GNDGDEYLDL  180
IEYNLCSEYQ YQDHNDQQQL SGVHQGDSGS DSVVPVQSFV AKEQQELQLQ QQQNILVESW  240
YESSKAAFFN TTATSQNVTV PFTNAGYLLT TSSIPNSYSR FPNGSTDLLP SPSLLMPLQF  300
TQTNREARVQ RFREKRKSRK FEKKIRYATR KANAENRPRV KGRFVRKKDM EFEVREDHGY  360
GIVPSYQIG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336347RPRVKGRFVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G024100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622896.10.0zinc finger protein CONSTANS-LIKE 1-like
TrEMBLA0A2C9WH590.0A0A2C9WH59_MANES; Uncharacterized protein
STRINGcassava4.1_025867m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.11e-66CONSTANS-like 1