PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G031600.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 401aa    MW: 42872.4 Da    PI: 7.7633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G031600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33230286259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Manes.01G031600.2.p 230 DDGYNWRKYGQKQVKGSECPRSYYKCTQPTCPVKKKVERSL-DGQVTEIIYKGQHNHQ 286
                          8****************************************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-30217288IPR003657WRKY domain
SuperFamilySSF1182907.45E-26227288IPR003657WRKY domain
SMARTSM007741.2E-35229287IPR003657WRKY domain
PROSITE profilePS5081123.732230288IPR003657WRKY domain
PfamPF031062.4E-25230286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MADNGSRHPS PPVSSSSLPP SSSKSSSATS ARPTTIALPP RSSNESFFTS GLGVGFSPGP  60
MTLVSSLFSD SDDFKSFSQL LAGAMDSPAA NSNNKSPLPP VPQADKNSAA NVSRPANLSI  120
APPSQMFTVP RGLSPMVFLD SPALGLLSPE GNIGMRRQQA LAQVTAQAAQ VHSNMHIQAH  180
YSSSLPSAPA TSSTPLSSIP DPTASVQESS DFSPDQRSQA SSLVVDKPTD DGYNWRKYGQ  240
KQVKGSECPR SYYKCTQPTC PVKKKVERSL DGQVTEIIYK GQHNHQAPQP KRAKDAGSLN  300
GNSSNQSKFE LASQFQSGNV NKSKDRKDQE SSQATHELLS GTSDSEEVGD TETGVDENDE  360
DEPDPKRRYF CMTKCFNGHK RLSLLCMSKS FCCAEIQMSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-162302881574WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G031600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700071e-159KC470007.1 Jatropha curcas WRKY transcription factor 05 (WRKY05) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626413.10.0probable WRKY transcription factor 3
SwissprotQ9XI901e-101WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2C9WIS00.0A0A2C9WIS0_MANES; Uncharacterized protein
STRINGcassava4.1_005912m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-76WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]