PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G077300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 318aa    MW: 35183 Da    PI: 9.5243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G077300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31244301359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Manes.01G077300.1.p 244 DDYTWRKYGQKPIKGSPYPRNYYKCSSMrGCPARKHVERCLQDPSMLVVTYEGDHNHS 301
                          99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.3E-14202239IPR018872Zn-cluster domain
PROSITE profilePS5081129.275237303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-32237302IPR003657WRKY domain
SuperFamilySSF1182901.14E-26241302IPR003657WRKY domain
SMARTSM007744.4E-37242302IPR003657WRKY domain
PfamPF031061.9E-26244300IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MKETSGVPSW NFKVLEVAEK SFSQAYHLFS CISDKNRKRN IQEVNLIAQA TVNEFRILLN  60
LLDGSSQSDP KRIKRGPLPI SHDINPAELM ESPSSVPQNS GRNLTTQPQL LPFHSIQTTN  120
SLIPIKSFSF DRNTNMSKTN VDVTDRLIIS NLSLSQPITS FLSLDARGGT DKLLVHDSPS  180
EALASPDGSS MFSKSKSGVL SEETSAKCLA STGGCHCSRR RKSRIKKTIQ VPALSGKLAE  240
IPPDDYTWRK YGQKPIKGSP YPRNYYKCSS MRGCPARKHV ERCLQDPSML VVTYEGDHNH  300
SQVYISITQH LDSGLIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-202383001071WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222SRRRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G077300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852963e-40KC485296.1 Jatropha curcas WRKY transcription factor 44 (WRKY44) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623343.10.0probable WRKY transcription factor 11 isoform X1
TrEMBLA0A251LPI20.0A0A251LPI2_MANES; Uncharacterized protein
STRINGcassava4.1_028148m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-50WRKY DNA-binding protein 15