PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G085100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 261aa    MW: 28968.1 Da    PI: 7.9171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G085100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20171221255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Manes.01G085100.1.p 171 HYRGVRQRP-WGKYAAEIRDP---NrKGTRVWLGSFDTAIEAAKAYDRAAFKLRG 221
                          7********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-32170230IPR001471AP2/ERF domain
PfamPF008474.7E-14171221IPR001471AP2/ERF domain
CDDcd000183.45E-32171229No hitNo description
SuperFamilySSF541716.54E-23171230IPR016177DNA-binding domain
PROSITE profilePS5103224.012171229IPR001471AP2/ERF domain
SMARTSM003802.5E-37171235IPR001471AP2/ERF domain
PRINTSPR003678.4E-14172183IPR001471AP2/ERF domain
PRINTSPR003678.4E-14211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAVETVASAL ELIKQHLFDD LFDDPFSPVR SSSSLATSPT NLELSSSRCC SDCTQTSTSH  60
SAISFSDCLR DDCIGVHFFE FEAKPQIINF TTPNYSDSTT SFGILSSNDF LNFESKSQTS  120
PLNSSFQFQA SRKPSSNVSL PSKTDWIQFD KPNHKTVHGY SSVAAVEVKR HYRGVRQRPW  180
GKYAAEIRDP NRKGTRVWLG SFDTAIEAAK AYDRAAFKLR GSKAILNFPL EAGKLNTRAH  240
EVNDTDVTDD ASERKRTKTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-30170230161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G085100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629537.10.0ethylene-responsive transcription factor 5-like
TrEMBLA0A2C9WIW90.0A0A2C9WIW9_MANES; Uncharacterized protein
STRINGcassava4.1_027804m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.18e-54ethylene responsive element binding factor 6