PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G094200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 351aa MW: 38533.9 Da PI: 8.5103

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G094200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.8	5.9e-32	50	189	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasns 85 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ ++ ++s++ as+s Manes.01G094200.1.p 50 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPVNFGlnhppiLTSSHEFGASQS 139 689*************************************************************66666433333333333333333333 PP TCP 86 ssg........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +++ + ++k+++ ar++t+ek + + Manes.01G094200.1.p 140 NKEgfktngtinwedpgglarpnfwssD----------------------SMLKNKSKEVARDSTHEKENWS 189 3333223333333333333333332221......................1222444444555555554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	31.469	52	110	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.7E-29	52	185	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MMITSSSKEV DSPTKKEGDT SDGKISNGSS SSTSWLRLKD PRIVRVSRAF GGKDRHSKVC 60 TIRGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL NAAKHEIDEL PPLPMPPVNF 120 GLNHPPILTS SHEFGASQSN KEGFKTNGTI NWEDPGGLAR PNFWSSDSML KNKSKEVARD 180 STHEKENWSK GNDQEDNKLH SSLPGLINNN GIPYGSLFQL EHTNFPLSHL GSHGFAAQTA 240 DLHNVNAVSS PSTLSLSPGS QIFVCPSGTA QPYFPSHITA ASTEVDPRQI NHLQILTSST 300 QNFFPNTLAP TPYTMTQSAR PLHFSATPRL FHSHSSGSHQ PDKDQDFHCK *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MMITSSSKEV DSPTKKEGDT SDGKISNGSS SSTSWLRLKD PRIVRVSRAF GGKDRHSKVC  60
TIRGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL NAAKHEIDEL PPLPMPPVNF  120
GLNHPPILTS SHEFGASQSN KEGFKTNGTI NWEDPGGLAR PNFWSSDSML KNKSKEVARD  180
STHEKENWSK GNDQEDNKLH SSLPGLINNN GIPYGSLFQL EHTNFPLSHL GSHGFAAQTA  240
DLHNVNAVSS PSTLSLSPGS QIFVCPSGTA QPYFPSHITA ASTEVDPRQI NHLQILTSST  300
QNFFPNTLAP TPYTMTQSAR PLHFSATPRL FHSHSSGSHQ PDKDQDFHCK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-18	57	111	1	55	Putative transcription factor PCF6
5zkt_B	1e-18	57	111	1	55	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G094200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633189.1	0.0	transcription factor TCP13-like
TrEMBL	A0A2C9WKP4	0.0	A0A2C9WKP4_MANES; Uncharacterized protein
STRING	cassava4.1_010816m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF932	34	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	4e-51	plastid transcription factor 1

Link Out ? help Back to Top
Phytozome	Manes.01G094200.1.p