PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G103200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27881.6 Da    PI: 6.9555
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G103200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.7e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Manes.01G103200.1.p  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                         79***********************************************96 PP
2K-box97.61.9e-3275171399
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                          ++++++++++++ +++ e +kL ++ie Lqr++R++ GedL+ +sl+eLq+Leqq++++lk++R++Kn+l+ e+i+elqkkek+l+e+n+
  Manes.01G103200.1.p  75 SAEQVNNQSEQQGNWSLECSKLMARIEVLQRSLRNFAGEDLDGMSLRELQHLEQQIDTGLKRVRTRKNQLYNESISELQKKEKALHEQNN 164
                          566677889999****************************************************************************** PP

                K-box  93 aLrkkle 99 
                          +L+k+le
  Manes.01G103200.1.p 165 MLSKQLE 171
                          ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.099161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.78E-41276No hitNo description
SuperFamilySSF554551.57E-33289IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2781170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.73686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SSMESILEKY ERYSSAEQVN NQSEQQGNWS LECSKLMARI EVLQRSLRNF AGEDLDGMSL  120
RELQHLEQQI DTGLKRVRTR KNQLYNESIS ELQKKEKALH EQNNMLSKQL EQNEKTMAEG  180
SNWEQQNLGQ NPTSFMPLPP PAIGGTLQTR EFMKENEEGM AQIEEPNTMQ MPSWMLRHVN  240
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-22174173MEF2 CHIMERA
6byy_B8e-22174173MEF2 CHIMERA
6byy_C8e-22174173MEF2 CHIMERA
6byy_D8e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G103200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5151531e-54AY515153.1 Populus deltoides APETALA-like protein AP1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623792.11e-179truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-102AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2C9WKY61e-177A0A2C9WKY6_MANES; Uncharacterized protein
STRINGcassava4.1_024345m1e-134(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]