PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G113300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YC

Protein Properties

Length: 202aa MW: 23360.8 Da PI: 6.0186

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G113300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	126.8	7.8e-40	57	159	2	100
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 l +fw++q i++ + fk +h+lPlarik+++k++ +vkmisa++P+llskacelfileltlrswl+++e+kr+ l++ dia a+ d Manes.01G113300.1.p 57 LDNFWNRQlwkIQNISAFKsRHQLPLARIKRVMKTNREVKMISADTPILLSKACELFILELTLRSWLQTQECKRQMLQRFDIARAIRLVD 146 789***88888899999889**************************************************************** PP NF-YC 88 ifdflvdivprde 100 + dflv+ v d+ Manes.01G113300.1.p 147 TLDFLVELVSFDH 159 *****999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.59E-23	60	161	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.3E-28	75	143	IPR009072	Histone-fold
Pfam	PF00808	3.5E-14	79	142	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDLNQSIEFN LSSTSSPQLH NFMPMSSFLL PNYNHTTKQG CEEARNSRFM QVLKQNLDNF 60 WNRQLWKIQN ISAFKSRHQL PLARIKRVMK TNREVKMISA DTPILLSKAC ELFILELTLR 120 SWLQTQECKR QMLQRFDIAR AIRLVDTLDF LVELVSFDHH NKDDETGNCG EDVEPLSAVQ 180 VPVPMIDINE DLVLTDQEIA P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-28	64	155	3	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G113300.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629508.1	1e-148	nuclear transcription factor Y subunit C-4-like isoform X1
Refseq	XP_021629516.1	1e-148	nuclear transcription factor Y subunit C-4-like isoform X1
Swissprot	Q9SMP0	6e-33	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2C9WJP3	1e-147	A0A2C9WJP3_MANES; Uncharacterized protein
STRING	cassava4.1_026359m	1e-148	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14399	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-35	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Manes.01G113300.1.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]