PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G115400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 223aa    MW: 24792.8 Da    PI: 7.4715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G115400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.3e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+++Ed++l+d+++ +G g+W++I++  g++R++k+c++rw++yl
  Manes.01G115400.1.p 14 KGAWSKQEDQKLIDYITTHGQGCWRSIPQAAGLHRCGKSCRLRWRNYL 61
                         79*********************************************7 PP
2Myb_DNA-binding55.11.8e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++yl
  Manes.01G115400.1.p  67 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNHWNSYL 112
                          8999******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.432961IPR017930Myb domain
SuperFamilySSF466891.42E-2912108IPR009057Homeodomain-like
SMARTSM007174.2E-151363IPR001005SANT/Myb domain
PfamPF002491.1E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-231568IPR009057Homeodomain-like
CDDcd001679.97E-121661No hitNo description
PROSITE profilePS5129427.67662116IPR017930Myb domain
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002498.3E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2569117IPR009057Homeodomain-like
CDDcd001672.03E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRKPCCDKQG NNNKGAWSKQ EDQKLIDYIT THGQGCWRSI PQAAGLHRCG KSCRLRWRNY  60
LRPDIKRGNF AQDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNHWNS YLRKKLINMG  120
IDPNNHRLNQ ILPRSQPVDD DEEACKSNKS KADTDGVSDA ATSSLEEDET SAGSYHINLD  180
LTIAVPSPAH APNLETKPEN CGIAATGEVL QNETSPALLL FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G115400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623916.11e-165transcription repressor MYB6-like isoform X2
SwissprotQ388512e-68MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A2C9WJY51e-164A0A2C9WJY5_MANES; Uncharacterized protein
STRINGcassava4.1_015705m1e-165(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-70myb domain protein 6