PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G117100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 240aa    MW: 27415.6 Da    PI: 10.7739
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G117100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-17956148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd ll ++v ++G g W+ ++ + g++R++k+c++rw++yl
  Manes.01G117100.1.p  9 KGAWTPEEDNLLRKCVDKYGEGKWHQVPLKAGLNRCRKSCRLRWLNYL 56
                         79********************************************97 PP
2Myb_DNA-binding46.77.1e-1562107148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Manes.01G117100.1.p  62 KGEFEADEVDLIIRLHKLLGNR-WALIAGRIP-GRTANDVKNYWNTHL 107
                          688999****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.379460IPR017930Myb domain
SuperFamilySSF466898.44E-296103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-22759IPR009057Homeodomain-like
SMARTSM007172.4E-15858IPR001005SANT/Myb domain
PfamPF002491.1E-16956IPR001005SANT/Myb domain
CDDcd001674.92E-111156No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2360110IPR009057Homeodomain-like
SMARTSM007179.3E-1561109IPR001005SANT/Myb domain
PROSITE profilePS5129419.83361111IPR017930Myb domain
PfamPF002499.8E-1462107IPR001005SANT/Myb domain
CDDcd001678.40E-1064107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEGLFGVRKG AWTPEEDNLL RKCVDKYGEG KWHQVPLKAG LNRCRKSCRL RWLNYLKPNI  60
KKGEFEADEV DLIIRLHKLL GNRWALIAGR IPGRTANDVK NYWNTHLRKK EASARINAKK  120
HSTPTMTKAS IIKPRPFNLP KKVFWSSNGK TPVTLTTHVP VIDNNNTLCK PCMPSPPLDD  180
HLNGWLESLF NDNEVKQKDT SCASGSGLRR DSQQWAFRRR NECSSCACGR HRGRRRGFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2391104104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-2391104104C-Myb DNA-Binding Domain
1msf_C6e-2391104104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G117100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632769.11e-167transcription factor MYB90-like
SwissprotQ9FNV91e-65MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2C9WK051e-177A0A2C9WK05_MANES; Uncharacterized protein
STRINGPOPTR_0005s14480.13e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-68myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]