PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G117200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 206aa    MW: 23301.5 Da    PI: 8.3421
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G117200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-0937692248
                         T.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 22 g.......tWktIartmgkgRtlkqcksrwqkyl 48
                         +       +W++Ia +++ gRt++++k++w+++l
  Manes.01G117200.1.p 37 RsgksilhRWSLIAGRLP-GRTANDVKNYWNTHL 69
                         055556668*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0152369IPR017877Myb-like domain
SuperFamilySSF466894.68E-83773IPR009057Homeodomain-like
PfamPF002492.1E-74169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-134486IPR009057Homeodomain-like
CDDcd001675.75E-64569No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MERVLESTRW SYELWCLLKL VFWVNRFKSN IVIGSNRSGK SILHRWSLIA GRLPGRTAND  60
VKNYWNTHLK KDASARINAK EDKRIFGPVV EKPLLLLTTH VPVNDNNNTL CKPCMPLPPS  120
NDHVKWWESL LKENEVNQKD TSCDSGSGET HISRLSGEEM NAAAVQVGVT KVGDVGFNKE  180
GHIWGSNFYF DVGLWDLFDT HVNIP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G117200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632769.16e-38transcription factor MYB90-like
TrEMBLA0A2C9WKD91e-150A0A2C9WKD9_MANES; Uncharacterized protein
STRINGcassava4.1_029945m1e-115(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.19e-15myb domain protein 82