PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G117600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GeBP
Protein Properties Length: 334aa    MW: 37122.8 Da    PI: 7.1832
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G117600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.41.4e-2580174297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          +f+r+w+e Dei +LqGl+d  +++g s   d+  fy+ +++ +s  +s+sql+eK+rrL+kKf+  +++ ++g +ps+ ++hd   f+l
  Manes.01G117600.1.p  80 KFHRIWTEPDEIRFLQGLLDS-SSHGLSFPRDLPIFYDNFSNTMSQPYSRSQLSEKLRRLRKKFRVISSRLARGLSPSLLSPHDCALFDL 168
                          699*****************9.788999999*********************************************************** PP

               DUF573  92 skkiWg 97 
                          skk+W 
  Manes.01G117600.1.p 169 SKKLWS 174
                          *****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-2881174IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MLRNKNSGSG SGSGSGTESK SKIATVSMPM DSTPLPRPEP TQPLSLTSSS ASKLPVKRKT  60
PHLHSSSPAL DFDSKPPPFK FHRIWTEPDE IRFLQGLLDS SSHGLSFPRD LPIFYDNFSN  120
TMSQPYSRSQ LSEKLRRLRK KFRVISSRLA RGLSPSLLSP HDCALFDLSK KLWSPEFSSI  180
SPFGCSKINS GSNLDVGTSA NLVGVQVSFS PVLPVVFSNN DDDVNEFGPL DVDDIDYGNV  240
PKTSEMHPDC DHIEAREEDS GLAKSVVAKS VLNVFDECLK EVQMVLAREN LRYSDDFKDF  300
ESRWREQRVA EMDVLARRLR LVLENTVNRQ SVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G117600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613958.10.0probable transcription factor At5g28040 isoform X3
TrEMBLA0A2C9WLE50.0A0A2C9WLE5_MANES; Uncharacterized protein
STRINGcassava4.1_016122m1e-151(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1654199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-20DNA-binding storekeeper protein-related transcriptional regulator