PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G118700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 220aa    MW: 24771.2 Da    PI: 4.8762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G118700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.2e-113291947
                         TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47
                         l++g W++Ia++++ gRt++++k++w+++
  Manes.01G118700.2.p  3 LPKG-WSRIASHLP-GRTDNEIKNHWNTH 29
                         7889.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.995134IPR017930Myb domain
PfamPF002491.6E-8329IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-9436IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-13641IPR009057Homeodomain-like
CDDcd001671.59E-6730No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNLPKGWSRI ASHLPGRTDN EIKNHWNTHI KKKLRKLGID PLTHKPLPAT ETPPQEQQQA  60
MAELQQNKET KTSAESRITE EETLEEDKRM TSTFETIEPT NNSFCVDEVP LIEPHEMLVP  120
CTAASSSSTT TTSSSSSSSH GSNNNLFLEG FQFADFEWPD NAIDDLWGDD LSSSWDLLIN  180
DADSDRKQLH SHELHHHHAL INQCSKMVFD QDSWTHGIS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G118700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621506.11e-155protein ODORANT1-like
TrEMBLA0A2C9WML41e-160A0A2C9WML4_MANES; Uncharacterized protein
STRINGcassava4.1_012707m1e-154(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-25myb domain protein 43