PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G122900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 645aa MW: 71127.4 Da PI: 5.9498

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G122900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.8e-19	25	80	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le++F+++++p+ ++r++L+++lgL+ +q+k+WFqN+R++ k Manes.01G122900.1.p 25 KKSYHRHTARQIQQLESFFKECPHPDDNQRRQLSRELGLEPKQIKFWFQNKRTQAK 80 688899***********************************************988 PP
2	START	60.5	5.3e-20	282	369	117	206
E.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 117 qlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205 q +a++wvi+dvS d +++ s R+ +lpSg++i++++ng +kvtwvehv++++++ h l+r l+ + a ga +w tlqr ce Manes.01G122900.1.p 282 QIEADTWVIADVSYDCLKENG---SPSRSWRLPSGCMIQDMANGCCKVTWVEHVEVDDKTQtHRLYRDLICGSPAYGAERWIVTLQRMCE 368 5689*********999987...4669999***********************9998*************************9 PP X CS START 206 k 206 + Manes.01G122900.1.p 369 R 369 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-21	8	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.19E-19	8	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	22	82	IPR001356	Homeobox domain
SMART	SM00389	7.0E-18	24	86	IPR001356	Homeobox domain
Pfam	PF00046	4.8E-17	25	80	IPR001356	Homeobox domain
CDD	cd00086	1.90E-17	25	83	No hit	No description
PROSITE pattern	PS00027	0	57	80	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	11.102	196	247	IPR002913	START domain
SuperFamily	SSF55961	1.21E-12	203	369	No hit	No description
PROSITE profile	PS50848	18.355	282	372	IPR002913	START domain
Pfam	PF01852	9.9E-15	283	369	IPR002913	START domain
SuperFamily	SSF55961	3.85E-15	400	604	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MSAASSAAGG ASGDEQEPSN TSRGKKSYHR HTARQIQQLE SFFKECPHPD DNQRRQLSRE 60 LGLEPKQIKF WFQNKRTQAK AQNERADNSV LRAENERIQC ENLAIREALK NVICPSCGGP 120 PFGEEERQRS LQKLQQENAQ LKEEIDSLMP IRGSSLEFSM AGFPIQRLGS PALDLELNPG 180 IADHMSMPFQ QFKGIPDMEK ALMSETAASS MEELIRLLRI NEPLWIRTQP DGKYTIHRDS 240 YDKIFPRTNH FKGSNARTES SKDSGMVTVT GMNLVEMFLD TQIEADTWVI ADVSYDCLKE 300 NGSPSRSWRL PSGCMIQDMA NGCCKVTWVE HVEVDDKTQT HRLYRDLICG SPAYGAERWI 360 VTLQRMCERF AFSSEETIPS WELGGVHSYV AHCSAITSSE GRKSIMKLGH RIVKNFCSTL 420 SMSDKLDFPQ LSEVNNSGVR ISVRKSMELG QPSGMIVSAA TSLWLPLLPQ DVFSFFRDEK 480 SRPQWDILSS GNPVHELTQI SNGVHPGNCI SIIRPFAPSE NNMVILQESC TDPLGSLLVY 540 APIDIPTMNM AINGEDSSMI PVLPSGFVIS GDGRPDTGNG ASTSANAGRS SGGSLLTVAF 600 QILVSTPCST SSKELNMESV ATVNTLISST VQKIRAALNC SGLD*

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MSAASSAAGG ASGDEQEPSN TSRGKKSYHR HTARQIQQLE SFFKECPHPD DNQRRQLSRE  60
LGLEPKQIKF WFQNKRTQAK AQNERADNSV LRAENERIQC ENLAIREALK NVICPSCGGP  120
PFGEEERQRS LQKLQQENAQ LKEEIDSLMP IRGSSLEFSM AGFPIQRLGS PALDLELNPG  180
IADHMSMPFQ QFKGIPDMEK ALMSETAASS MEELIRLLRI NEPLWIRTQP DGKYTIHRDS  240
YDKIFPRTNH FKGSNARTES SKDSGMVTVT GMNLVEMFLD TQIEADTWVI ADVSYDCLKE  300
NGSPSRSWRL PSGCMIQDMA NGCCKVTWVE HVEVDDKTQT HRLYRDLICG SPAYGAERWI  360
VTLQRMCERF AFSSEETIPS WELGGVHSYV AHCSAITSSE GRKSIMKLGH RIVKNFCSTL  420
SMSDKLDFPQ LSEVNNSGVR ISVRKSMELG QPSGMIVSAA TSLWLPLLPQ DVFSFFRDEK  480
SRPQWDILSS GNPVHELTQI SNGVHPGNCI SIIRPFAPSE NNMVILQESC TDPLGSLLVY  540
APIDIPTMNM AINGEDSSMI PVLPSGFVIS GDGRPDTGNG ASTSANAGRS SGGSLLTVAF  600
QILVSTPCST SSKELNMESV ATVNTLISST VQKIRAALNC SGLD*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G122900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY962205	8e-36	AY962205.1 Hevea brasiliensis clone hmac15 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605433.1	0.0	homeobox-leucine zipper protein ROC8-like
Swissprot	Q69T58	0.0	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A2C9WK67	0.0	A0A2C9WK67_MANES; Uncharacterized protein
STRING	cassava4.1_023179m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1026	33	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17920.1	0.0	homeodomain GLABROUS 12

Link Out ? help Back to Top
Phytozome	Manes.01G122900.1.p