PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G169000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 161aa    MW: 18249.7 Da    PI: 9.7854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G169000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-051941123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ Cg+ F++   L  H+++H
  Manes.01G169000.1.p 19 YFCNFCGREFRSAQALGGHMNVH 41
                         78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.49E-71646No hitNo description
Gene3DG3DSA:3.30.160.608.7E-41843IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8221946IPR007087Zinc finger, C2H2
SMARTSM003550.00441941IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-62142IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEAAKYWEEE ASVWPPRFYF CNFCGREFRS AQALGGHMNV HRRDRASLKQ SPSGFQNHFL  60
LHHIQYPRKI ALVYSPNSRV FMSPAGVSTP MTMAIGDTSV IPGGKKKENV SRKRQRSDEA  120
FINESSSMKK DNLQADVNKR VCQDATQDLD LELRLGFSHV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-111441229superman protein
2l1o_A3e-111441229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G169000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605997.11e-120zinc finger protein 11-like
TrEMBLA0A2C9WMS51e-118A0A2C9WMS5_MANES; Uncharacterized protein
STRINGcassava4.1_027861m1e-119(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.17e-20C2H2 family protein