PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G172100.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 657aa    MW: 72564.6 Da    PI: 8.7724
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G172100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07556605147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Manes.01G172100.3.p 556 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 605
                          6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.18E-7363450IPR029071Ubiquitin-related domain
PROSITE profilePS500539.003367437IPR000626Ubiquitin domain
PROSITE profilePS5129414.733551610IPR017930Myb domain
SMARTSM007172.0E-7555608IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10556606IPR009057Homeodomain-like
SuperFamilySSF466891.45E-15557637IPR009057Homeodomain-like
CDDcd116602.35E-17557607No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MCAFDLLAIV AGNLLLEKGN NTPSSSDISA DKDHCKVANN AVKNECQNDE KNMKVEVHDQ  60
GSITRSFFVS ELVSQGNEQN HCSKEYLYAE NDLNLGLAAT VATSECAERI GSGMMVNSKS  120
QNEIRTFAGN LDVGPSLLRE FDNCKLERET KKLIKDEPHK CGKVQNGTVA NMCSFEDPVV  180
WDEKPHTLVS SGSSTKVPLR GNNNSHSSYP TNGDNVNVNS RDDDENSSGC THPSTTKKFF  240
RPAPRIGDRR IRKILASKYW KGAPRSNDAT LSNTDGADSK PLYHKRKNYY KYQRSERLYP  300
FKKRKHFAYG SQLDSGEGMS NEFVSDSPKK GNDEDAAGSC SKLHAAIEAP SSVAGQHNSF  360
RPRHSHVKLR IKSFKVPELF IEIPESATVG LLKRTVMEAV TTILGGGLRV GVLLQGKKIR  420
DDHKTLQQTG ICHNNQLDAL GFSLEPNSSR AAPSFCPVDS PFLIDTAQPV SRYPPAPSVA  480
HHATCAASPE PHQTNLGNLI ESDHDSAPSP TAMSIEKGTT DSKALVPVPE MNIEALAVVP  540
ADLKSKRSEI VQRRIRRPFS VAEVEALVQA VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD  600
KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSHQQ AKQHIKQQQQ PPSLEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-585406461107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284304KRKNYYKYQRSERLYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G172100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623228.10.0telomere repeat-binding protein 5-like isoform X2
TrEMBLA0A2C9WM210.0A0A2C9WM21_MANES; Uncharacterized protein
STRINGcassava4.1_002767m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-123TRF-like 2