PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G176000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 226aa    MW: 24336 Da    PI: 10.5823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G176000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069117138223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C  Cgk+F +  +L  H+r H
  Manes.01G176000.1.p 117 TCCLCGKTFLSMNSLFGHMRFH 138
                          6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.54870IPR015880Zinc finger, C2H2-like
PfamPF139129.2E-84872IPR007087Zinc finger, C2H2
SuperFamilySSF576679.15E-74970No hitNo description
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576679.15E-7112138No hitNo description
SMARTSM003550.67116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66116143IPR007087Zinc finger, C2H2
PfamPF138940.0012117138No hitNo description
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGDSASKISK LCIKIKIPNT PTSGTAKKPV GEGGSGSTDV QRQPTGYRVC EFCGKIFSSG  60
KAWGGHKRHH LKIMKNNNGK RTQQVSHIKM KKQMHGGSNR CNTIKAGDVM ITGGKPTCCL  120
CGKTFLSMNS LFGHMRFHPD RDWKGIRPPS APLPSSPKNQ ISSASEMGAY SSIDLLDSLS  180
SSGSWQKKGK RGICAADLIA EAARSLLRLS RDVGLSTQPA YVDLET
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G176000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592599.11e-167zinc finger protein ZAT9-like
TrEMBLA0A2C9WLT91e-166A0A2C9WLT9_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_022792m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-21C2H2 family protein