PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G182400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 445aa    MW: 49912.8 Da    PI: 6.7028
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G182400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS466.31.7e-142204411374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+cA++v+sgdle+a+ +L ++s+las +gd+mqR+aayfteALa+++ +  +++ +al++++ +   +see+ ++klf+e+ P+
  Manes.01G182400.1.p  20 LIHLLLTCANHVASGDLENAEVALGQISQLASANGDTMQRIAAYFTEALAHKVIKALPGVHRALNATKIT--LVSEEILVRKLFFETLPF 107
                          689*************************************************************999998..7***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lk++++++NqaI ea+ege++vHiiD+++ +++QW++LlqaL++Rpegpp+lRiTg+++    +ke l +++++L+  Ae+l++pf+fn+
  Manes.01G182400.1.p 108 LKVAFVLTNQAIIEAMEGEKMVHIIDLNAAEPAQWLSLLQALNARPEGPPHLRITGIHQ----QKEVLDQMAHKLTGEAERLDIPFQFNP 193
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll........................................................ 214
                           ++++le+l++e+Lrvk+gEala+++vlqlh +l                                                        
  Manes.01G182400.1.p 194 -IVSKLENLDVEKLRVKTGEALAISSVLQLHPFLasddelrkrspvpsknsngshllralqmnqgtlgellekdmvngyspspdstslsp 282
                          .7999*********************************************************************************9988 PP

                 GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                           ++++s++   d +L+++++lsPk++vv+eq+++hn+++++er+leal+ y+alfd+le++++r+s er k+E++l+g+ei+n+vacega
  Manes.01G182400.1.p 283 lSSTASMKM--DYFLNMLWTLSPKLMVVMEQDSNHNGSNLMERLLEALYSYAALFDCLESTVSRTSMERLKIEKMLFGEEIKNIVACEGA 370
                          666666666..9****************************************************************************** PP

                 GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          er+erhe+lekW +rl+ aGF+ v+ls++ + qa+ ll+ ++ dgy+++ee+g++v++W+drpL+svSaWr
  Manes.01G182400.1.p 371 ERKERHEKLEKWIQRLDLAGFGYVNLSYYSMLQARKLLQGYGCDGYKIKEENGCVVICWHDRPLFSVSAWR 441
                          **********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.1831421IPR005202Transcription factor GRAS
PfamPF035145.8E-14020441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGSPYPMLRE LKSEERGLYL IHLLLTCANH VASGDLENAE VALGQISQLA SANGDTMQRI  60
AAYFTEALAH KVIKALPGVH RALNATKITL VSEEILVRKL FFETLPFLKV AFVLTNQAII  120
EAMEGEKMVH IIDLNAAEPA QWLSLLQALN ARPEGPPHLR ITGIHQQKEV LDQMAHKLTG  180
EAERLDIPFQ FNPIVSKLEN LDVEKLRVKT GEALAISSVL QLHPFLASDD ELRKRSPVPS  240
KNSNGSHLLR ALQMNQGTLG ELLEKDMVNG YSPSPDSTSL SPLSSTASMK MDYFLNMLWT  300
LSPKLMVVME QDSNHNGSNL MERLLEALYS YAALFDCLES TVSRTSMERL KIEKMLFGEE  360
IKNIVACEGA ERKERHEKLE KWIQRLDLAG FGYVNLSYYS MLQARKLLQG YGCDGYKIKE  420
ENGCVVICWH DRPLFSVSAW RCRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6244432380Protein SCARECROW
5b3h_D7e-6244432380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G182400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593665.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A251LSP10.0A0A251LSP1_MANES; Uncharacterized protein
STRINGcassava4.1_007518m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]