PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G184700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Nin-like

Protein Properties

Length: 121aa MW: 14446.2 Da PI: 10.8779

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G184700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	65.9	6.1e-21	10	59	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++le+++k+F+ pi++ Ake++v+lT+LK++ R++ I+RWPhRki+sl Manes.01G184700.1.p 10 APLELEEIRKHFDVPITKEAKEMKVGLTILKKRSRELKIMRWPHRKIRSL 59 5689********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.686	1	80	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-18	12	59	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
TKDNERKRSA PLELEEIRKH FDVPITKEAK EMKVGLTILK KRSRELKIMR WPHRKIRSLK 60 SLINNIKEMG LTNEIMMLEE HQRLLEKKPD MEFSETTKKL RQAIFKANYK KKRCLVAHHI 120 *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G184700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606181.1	6e-82	protein RKD4-like, partial
Swissprot	Q9LVU8	2e-38	RKD4_ARATH; Protein RKD4
TrEMBL	A0A2C9WPC0	3e-80	A0A2C9WPC0_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_023361m	5e-81	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	7e-41	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Manes.01G184700.1.p

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]