PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G186100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 411aa    MW: 45640.6 Da    PI: 7.7853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G186100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-52141421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          + pGfrFhPtdeelv +yLk+k+++++l++e +ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  Manes.01G186100.1.p  14 MLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIIKQLDIYKYDPWDLPKFATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 103
                          579***************************888***************8888899*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +glkk+Lvfykgra +g kt+W+mhe+rl
  Manes.01G186100.1.p 104 PIYSSeGNKCIGLKKSLVFYKGRAARGIKTEWMMHEFRL 142
                          ****956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-5711173IPR003441NAC domain
PROSITE profilePS5100556.41614173IPR003441NAC domain
PfamPF023651.9E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDYRNDVDKI DEVMLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIIKQL DIYKYDPWDL  60
PKFATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL  120
VFYKGRAARG IKTEWMMHEF RLPSLTDSAP PKSFIDKTIP ANDSWAICRI FKKTNSTAQR  180
ALSHSLVSPL PEPSTSPLLA KGSQVSSHQQ FSSQNMPLTT ETSSGIHLNY NNHEIQRSFV  240
ANLSALGFST CKPMNNNSSP LASKLSQLPI SNGDLTENFF LQPVGTLAHA AKCTVDASSV  300
LLNMSSSMLG DFGDHKLASD ESSTDFAGPQ DQHCSGFSLT CLPQVMQANA GDNALIKNPN  360
ATHMDDQWET VRSIGLPFSL PVSVGDAWKP NLLWDSSSCP IEMSTSFSTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-5151807171NO APICAL MERISTEM PROTEIN
1ut4_B5e-5151807171NO APICAL MERISTEM PROTEIN
1ut7_A5e-5151807171NO APICAL MERISTEM PROTEIN
1ut7_B5e-5151807171NO APICAL MERISTEM PROTEIN
3swm_A5e-51518010174NAC domain-containing protein 19
3swm_B5e-51518010174NAC domain-containing protein 19
3swm_C5e-51518010174NAC domain-containing protein 19
3swm_D5e-51518010174NAC domain-containing protein 19
3swp_A5e-51518010174NAC domain-containing protein 19
3swp_B5e-51518010174NAC domain-containing protein 19
3swp_C5e-51518010174NAC domain-containing protein 19
3swp_D5e-51518010174NAC domain-containing protein 19
4dul_A5e-5151807171NAC domain-containing protein 19
4dul_B5e-5151807171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G186100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051900.0KR605190.1 Manihot esculenta NAC transcription factors 52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630887.10.0protein FEZ-like
SwissprotQ9ZVH01e-109FEZ_ARATH; Protein FEZ
TrEMBLA0A0M4FBR60.0A0A0M4FBR6_MANES; NAC transcription factors 52
STRINGcassava4.1_023555m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-102NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  2. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]