PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G187900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 292aa    MW: 33063 Da    PI: 6.4233
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G187900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.6e-1883136356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Manes.01G187900.1.p  83 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 136
                          456899***********************************************9 PP
2HD-ZIP_I/II129.41.4e-4182172191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k++n++L++++++L++e
  Manes.01G187900.1.p  82 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKADNDALQAQNQKLHAE 171
                          69**************************************************************************************98 PP

          HD-ZIP_I/II  91 l 91 
                          +
  Manes.01G187900.1.p 172 I 172
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.19E-2061140IPR009057Homeodomain-like
PROSITE profilePS5007117.32978138IPR001356Homeobox domain
SMARTSM003891.8E-1781142IPR001356Homeobox domain
CDDcd000869.29E-1683139No hitNo description
PfamPF000462.9E-1583136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-1985145IPR009057Homeodomain-like
PRINTSPR000311.2E-5109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5118134IPR000047Helix-turn-helix motif
PfamPF021839.2E-16138178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTCNGMAFFP ANFMLQTPHE EDHHQPPTSL NPILPSCTAQ DFHGVASFLG KRSMSFSGID  60
ASCHEEANGE DELSDDGSQA GEKKRRLNME QVKTLEKNFE LGNKLEPERK MQLARALGLQ  120
PRQIAIWFQN RRARWKTKQL EKDYDLLKRQ FEAIKADNDA LQAQNQKLHA EILALKSREP  180
TESINLNKET EGSCSNRSEN SSDIKLDISR TPAIDSPLSN RPTSRTLFPS SSTMRPTGVA  240
QLFQNSSSRP DHIHCQKNID QMVKEESLSN MFCGIDDQSG FWPWLEQQHF N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G187900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618165.10.0homeobox-leucine zipper protein ATHB-13-like
RefseqXP_021618174.10.0homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-124ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2C9WNB80.0A0A2C9WNB8_MANES; Uncharacterized protein
STRINGcassava4.1_013285m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-127HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]