PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G196000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 251aa    MW: 28468.1 Da    PI: 8.1553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G196000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002784106123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C k F ++  L  H++ H
  Manes.01G196000.1.p  84 FECQYCFKEFANSQALGGHQNAH 106
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-580110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-680111No hitNo description
PROSITE profilePS5015711.40684111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDKESSTILS STLDGENCHS FESCVEKKLK LFGFELNPCR NDESCLKVSA EGDESVNSSN  60
VVSSERDKPV KEKSLTADPD DKKFECQYCF KEFANSQALG GHQNAHKKER MKKKRLQLQA  120
RKASISCYLQ PFQKNLSYNC HGSKWFYDPS CYTPEFNLCE ESQISFIPYD QDSHINASQV  180
PNWYAIPAQV PFQQETCMFT LTRPDRSREH RPVIKKRSPL PASKQTCKSL DLQLGLGLQS  240
NIRSSTRTGI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G196000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605156.10.0uncharacterized protein LOC110609691
TrEMBLA0A2C9WME10.0A0A2C9WME1_MANES; Uncharacterized protein
STRINGcassava4.1_014634m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.18e-16C2H2 family protein