PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G204100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 458aa    MW: 50213.6 Da    PI: 9.1976
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G204100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-057799123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Manes.01G204100.1.p 77 FVCEICNKGFQRDQNLQLHRRGH 99
                         89*******************88 PP
2zf-C2H212.30.00051153175123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Manes.01G204100.1.p 153 WKCEKCSKIYAVQSDWKAHSKTC 175
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-67699No hitNo description
PfamPF121717.1E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497799IPR007087Zinc finger, C2H2
SMARTSM003550.0177799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355280118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-6148173No hitNo description
SMARTSM00355170153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MFPAAMSNST SLSEDASVSS GNRVQDFCGL NPVVSTVSPQ QQQQPKIKKK RSLPGNPDPD  60
AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNS KEIKKRAYVC  120
PEPSCVHHHP SRALGDLTGI KKHYCRKHGE KKWKCEKCSK IYAVQSDWKA HSKTCGTREY  180
RCDCGTLFSR KDSFITHRAF CDALAEESAR LSAHQLVSAN PTAQTLLLQN PQPNPSLLPL  240
TTHHHHQLSL NPWDPPPQNP SDPPQNPVQI KPETHQFQLA PLFQEPPLSL PTHKGLMTSP  300
FQNLSNPAVS ASSHHLSATA LLQKAATVGA TQSVGLSHMT QLDMGEFRAV SQTAGDSVGQ  360
NPCQGSYLDN LAAWQKNDRL TRDFLGLKGE GHAANGNGNV ANGNGGVNVS INMRGMLTYT  420
GGVGLQQYSE RDHTMSKPRG FAYPQQPPPA SETWGDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36149213367Zinc finger protein JACKDAW
5b3h_F3e-36149213367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G204100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-131AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610960.10.0protein indeterminate-domain 12-like
SwissprotO227591e-135IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A2C9WNZ30.0A0A2C9WNZ3_MANES; Uncharacterized protein
STRINGcassava4.1_007315m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-113indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]